Package: rCNV 1.3.9000
rCNV: Detect Copy Number Variants from SNPs Data
Functions in this package will import filtered variant call format (VCF) files of SNPs data and generate data sets to detect copy number variants, visualize them and do downstream analyses with copy number variants(e.g. Environmental association analyses).
Authors:
rCNV_1.3.9000.tar.gz
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rCNV_1.3.9000.tgz(r-4.4-x86_64)rCNV_1.3.9000.tgz(r-4.4-arm64)rCNV_1.3.9000.tgz(r-4.3-x86_64)rCNV_1.3.9000.tgz(r-4.3-arm64)
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rCNV.pdf |rCNV.html✨
rCNV/json (API)
NEWS
# Install 'rCNV' in R: |
install.packages('rCNV', repos = c('https://piyalkarum.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/piyalkarum/rcnv/issues
cnv-analysiscopy-number-variationgene-duplicationgeneticsgenomicslandscape-geneticssnps
Last updated 2 days agofrom:9e87b42428. Checks:OK: 1 NOTE: 8. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Sep 16 2024 |
R-4.5-win-x86_64 | NOTE | Sep 16 2024 |
R-4.5-linux-x86_64 | NOTE | Sep 16 2024 |
R-4.4-win-x86_64 | NOTE | Sep 16 2024 |
R-4.4-mac-x86_64 | NOTE | Sep 16 2024 |
R-4.4-mac-aarch64 | NOTE | Sep 16 2024 |
R-4.3-win-x86_64 | NOTE | Sep 16 2024 |
R-4.3-mac-x86_64 | NOTE | Sep 16 2024 |
R-4.3-mac-aarch64 | NOTE | Sep 16 2024 |
Exports:ad.correctallele.freqallele.infocnvcpm.normaldepthVsSampledup.plotdup.validatedupGetexportVCFget.missgt.formath.zygosityhetTgenmafnorm.factpower.biasreadVCFrelatednesssig.hetssim.alsvcf.statvstvstPermutation
Dependencies:abindbackportsbase64encbslibcachemcheckmatecliclustercolorspacecorpcorcpp11data.tabledigestevaluatefansifarverfastmapfdrtoolfontawesomeforeignFormulafsggplot2glassoglueGPArotationgridExtragtablegtoolshighrHmischtmlTablehtmltoolshtmlwidgetsigraphisobandjpegjquerylibjsonliteknitrlabelinglatticelavaanlifecyclemagrittrMASSMatrixmemoisemgcvmimemnormtmunsellnlmennetnumDerivpbapplypbivnormpillarpkgconfigplyrpngpsychqgraphquadprogR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppreshape2rlangrmarkdownrpartrstudioapisassscalesstringistringrtibbletinytexutf8vctrsviridisviridisLitewithrxfunyaml